Uses of Class
net.sf.amiba.AmibaException

Packages that use AmibaException

net.sf.amiba
net.sf.amiba.evolve
net.sf.amiba.evolve.gene
net.sf.amiba.evolve.operators
net.sf.amiba.evolve.population
net.sf.amiba.genegrammar
net.sf.amiba.impl.scientific

Uses of AmibaException in net.sf.amiba

Methods in net.sf.amiba that throw AmibaException

List<FitnessCase<T>>

FitnessCaseLoader.load(String fileName)

Uses of AmibaException in net.sf.amiba.evolve

Methods in net.sf.amiba.evolve that throw AmibaException

Population<T>	EvolutionEngine.evolve() evolve the defualt FixedNumberPopulation
void	EvolutionEngine.evolve(Population<T> population) evolve the given population

Constructors in net.sf.amiba.evolve that throw AmibaException

EvolutionEngine(File configFile, AmibaFactory<T> factory)
Use the configuration file and the AmibaFactory to build this engine.

Uses of AmibaException in net.sf.amiba.evolve.gene

Methods in net.sf.amiba.evolve.gene that throw AmibaException

double	Individual.evaluateFitness(List<FitnessCase<T>> fitnessCases) This method evaluates afresh the fitness of this individual by building and evaluating the Abstarct Syntax Tree.
List<T>	Individual.useOn(List<FitnessCase<T>> fitnessCases) use this Individual to calculate the the values for given fitness cases.

Constructors in net.sf.amiba.evolve.gene that throw AmibaException

IndividualFactory(Node genome, AmibaFactory<T> factory)

Uses of AmibaException in net.sf.amiba.evolve.operators

Constructors in net.sf.amiba.evolve.operators that throw AmibaException

MutationEngine(Node mutationElement)
use the values from the mutation element to build this engine

RecombinationEngine(Node recombinationElement)
use the values from the recombination element to build this engine

TranspositionEngine(Node transpositionElement)
use the values from the transposition element to build this engine

Uses of AmibaException in net.sf.amiba.evolve.population

Methods in net.sf.amiba.evolve.population that throw AmibaException

void	DefaultPopulation.nextGeneration()
void	Population.nextGeneration() this performs selection and replication so that this population is at the next generation once this method completes

Constructors in net.sf.amiba.evolve.population that throw AmibaException

DefaultPopulation(int number, IndividualFactory<T> individualFactory, Selector<T> selector, List<FitnessCase<T>> fitnessCases)

Uses of AmibaException in net.sf.amiba.genegrammar

Methods in net.sf.amiba.genegrammar that throw AmibaException

double	GeneGrammar.evaluate(Gene[] genes, List<FitnessCase<T>> fitnessCases) evaluate the gene array and put a value on it.
protected abstract GEPRootNode<T>	GeneGrammar.parse(String sequence) parse the given sequence and return the root of the AST.
List<T>	GeneGrammar.useOn(Gene[] genes, List<FitnessCase<T>> fitnessCases)

Uses of AmibaException in net.sf.amiba.impl.scientific

Methods in net.sf.amiba.impl.scientific that throw AmibaException

List<FitnessCase<Double>>	DoubleFitnessCaseLoader.load(String fileName)
protected GEPRootNode<Double>	ScientificGrammar.parse(String sequence)